PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016481125.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 210aa    MW: 23325 Da    PI: 6.1534
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016481125.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.00125880123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C + F ++  L  H++ H
  XP_016481125.1 58 FSCNFCRRKFYSSQALGGHQNAH 80
                    89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.74E-65685No hitNo description
PROSITE profilePS5015711.1985885IPR007087Zinc finger, C2H2
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MKPPNFNLES EDESEDSMPV TLDLTLGFNS SDPELNANGE TSDEVVPHPP TAVLSRVFSC  60
NFCRRKFYSS QALGGHQNAH KRERTLAKRA MRMGMLSDRY ASLASLPLHG AAFRSLGVEA  120
HAYMHQRVSY QDTPTHPSRA GARFEQGYFG MPVFVEDDEV EMFWPGSFRQ VEGIGGNQRF  180
NSGQGSNINF VTVAPPTRTD PSLPDLNLKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754431e-176HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009803468.11e-157PREDICTED: zinc finger protein 4-like isoform X3
RefseqXP_016481125.11e-157PREDICTED: zinc finger protein 4-like isoform X3
SwissprotQ392632e-49ZFP4_ARATH; Zinc finger protein 4
TrEMBLM1CVW71e-132M1CVW7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000758981e-132(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.11e-50zinc finger protein 4